PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G034600.1
Common NameB456_003G034600, LOC105787725
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 325aa    MW: 36703.5 Da    PI: 6.1813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G034600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12146192455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ ++f  L  l+P +     kK +Ka++L  A++Y+k+Lq
  Gorai.003G034600.1 146 DHVIAERKRREKLSQRFISLSALIPGL-----KKTDKASVLGDAIKYMKQLQ 192
                         6999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16146204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.14E-12147196No hitNo description
SuperFamilySSF474597.2E-16147204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEIISNKWIS EVEMVEDPTF FPQFTIPNMD YSFDDTNFQS FSSESYSSYP NINNGSSNIQ  60
AFHQVVDDNE FKRPMKQLKT DNNWNFSINE NIPPPPPPPK ASSSSSPSSH IISFHNSNPS  120
PAVSQQYYEI TKKVGSTTRT PLHAQDHVIA ERKRREKLSQ RFISLSALIP GLKKTDKASV  180
LGDAIKYMKQ LQEKVATLEE QAAKKATESV ILVKKSQIYL DDETSSSDEN FDSNQTNNKL  240
FPEIEARVSD KDVLIRIHCE KNKGFISNIM NEVEKLHLCV LNTNVLPFGQ ATLDITIVAQ  300
MEAEFSMTVK DLVKSLRLAL LKFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155ERKRRE
2151156RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6152070.0JX615207.1 Gossypium hirsutum clone NBRI_GE59073 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469707.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0D2QMR80.0A0A0D2QMR8_G
STRINGVIT_03s0088g01240.t013e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-67bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]